{
  "claim_boundary": {
    "biological_truth": "NOT_EVALUATED",
    "cross_host_equality": "NOT_EVALUATED",
    "general_speedup_ratio": null,
    "matched_cpu_benchmark": false,
    "research_use_only": true,
    "salmon_comparison_n": 2
  },
  "gpu_observed": {
    "host": {
      "gpu": "NVIDIA GeForce RTX 3090",
      "os": "Ubuntu 24.04.4 LTS",
      "physical_ram_bytes": 134814732288,
      "vram_mib": 24576
    },
    "input": {
      "accession": "ERR188044",
      "paired_fragments": 36349964,
      "r1_sha256": "ee5d882165d967d9965e6b5b9c966ba86d6e913a9a13dd21d70e89f134a17b54",
      "r2_sha256": "bee3094e5153963884ed4dd93b678b9083c84bb70e1f98f76bbb1bf89bf39f90"
    },
    "one_pass": {
      "classification": "FULL_SIZE_ONE_PASS_END_TO_END_QUALIFIED",
      "cpus": 12,
      "duration_note": "The final FeatureCounts repair reused the cached alignment; no clean isolated one-pass task duration is published.",
      "isolated_alignment_seconds": null,
      "memory_contract_bytes": 45097156608,
      "peak_host_ram_bytes": 52991762432,
      "peak_vram_mib": 11598
    },
    "two_pass": {
      "cgroup_peak_bytes": 80275611648,
      "classification": "FULL_SIZE_TWO_PASS_END_TO_END_QUALIFIED_96GB",
      "cpus": 12,
      "isolated_alignment_seconds": 850,
      "memory_contract_bytes": 103079215104,
      "peak_host_ram_bytes": 61657542656,
      "peak_vram_mib": 11606
    }
  },
  "gui": {
    "actual_browser": "ACTUAL_BROWSER_RUNTIME_UNAVAILABLE",
    "app_test": "PASS",
    "classification": "UBUNTU_NATIVE_GUI_ONE_PASS_TWO_PASS_APPTEST_QUALIFIED_BROWSER_RUNTIME_BLOCKED"
  },
  "parity": {
    "classification": "HARAKO_NATIVE_C1_ONE_PASS_TWO_PASS_STRICT_SCIENTIFIC_PARITY",
    "one_pass": "STRICT_SCIENTIFIC_PARITY",
    "two_pass": "STRICT_SCIENTIFIC_PARITY"
  },
  "public_display_version": "v0.1.0-alpha.1",
  "salmon": {
    "fixture": {
      "accession": "ERR188044",
      "paired_fragments_raw": 1000000,
      "r1_sha256": "4a0741bea63c0165d7b85eaa786b17da5a489e81d98b9c28325fbaeed6724ca1",
      "r2_sha256": "cd8cb74fea4fcf6e4cd5d4c9658fba1ec08b40b8e76ae02fde8bcbab1090daca"
    },
    "median_wall_ratio_1_10_3_to_2_5_1": 1.2445654566148785,
    "median_wall_seconds": {
      "1.10.3": 28.199892380500387,
      "2.5.1": 22.658424457000365
    },
    "method_sensitive_features": {
      "gene_num_reads": {
        "q1": 552,
        "q2": 554
      },
      "gene_tpm": {
        "q1": 733,
        "q2": 731
      },
      "transcript_num_reads": {
        "q1": 2929,
        "q2": 2925
      },
      "transcript_tpm": {
        "q1": 2882,
        "q2": 2883
      }
    },
    "policy": {
      "future_default": "salmon_2_5_1_deterministic",
      "observed_results_change_default": false,
      "salmon_1_10_3_status": "VISIBLE_EXECUTABLE_BOUNDED_NUMERICAL_COMPATIBILITY"
    },
    "repeatability": {
      "salmon_1_10_3": {
        "byte_equal": false,
        "classification": "BOUNDED_NUMERICAL",
        "gene_num_reads": {
          "log_pearson": 0.9999555057062659,
          "maximum_absolute_difference": 7.143999999999998,
          "median_absolute_difference": 0.0,
          "spearman": 0.9999309299258744,
          "top100_overlap": 1.0,
          "zero_transitions": 2
        },
        "gene_tpm": {
          "log_pearson": 0.9999419145025578,
          "maximum_absolute_difference": 37.66399999999999,
          "median_absolute_difference": 0.0,
          "spearman": 0.9999314262347107,
          "top100_overlap": 1.0,
          "zero_transitions": 2
        },
        "numerical_digest_equal": false,
        "transcript_num_reads": {
          "log_pearson": 0.995991973593006,
          "maximum_absolute_difference": 58.205,
          "median_absolute_difference": 0.0,
          "spearman": 0.99608787971529,
          "top100_overlap": 1.0,
          "zero_transitions": 199
        },
        "transcript_tpm": {
          "log_pearson": 0.9963152961301194,
          "maximum_absolute_difference": 119.12690099999998,
          "median_absolute_difference": 0.0,
          "spearman": 0.9961225906759682,
          "top100_overlap": 1.0,
          "zero_transitions": 199
        }
      },
      "salmon_2_5_1": {
        "byte_equal": true,
        "feature_order_equal": true,
        "matrix_sha256_equal": true,
        "numerical_digest_equal": true,
        "spearman": 1.0,
        "zero_transitions": 0
      }
    },
    "spearman": {
      "gene_num_reads": {
        "median": 0.9889100708593668,
        "q1": 0.9889113989671028,
        "q2": 0.9889087427516308
      },
      "gene_tpm": {
        "median": 0.9874809273830688,
        "q1": 0.9874856267579568,
        "q2": 0.9874762280081808
      },
      "transcript_num_reads": {
        "median": 0.9543892850761764,
        "q1": 0.9544253337798938,
        "q2": 0.9543532363724591
      },
      "transcript_tpm": {
        "median": 0.9536972614857879,
        "q1": 0.9537426072869233,
        "q2": 0.9536519156846527
      }
    }
  },
  "schema_version": 1
}
